Beckford was included alongside Swansea City's Jason Scotland, League One's leading scorer with 24 goals.
But, despite United's remarkable season, 24-year-old Beckford was the only Leeds player listed in the PFA's star team.
PFA League One 'Team of the Year': Kieren Westwood (Carlisle); Angel Rangel (Swansea), Garry Monk (Swansea), Danny Livesey (Carlisle), Julian Bennett (Nottm Forest); Andy Robinson (Swansea), Ferrie Bodde (Swansea), Kris Commons (Nottm Forest), Richie Wellens (Doncaster); Jermaine Beckford (Leeds), Jason Scotland (Swansea).